Instructor:
This webpage will contain all the code, data and lecture materials for BIOL 699, Systematics Lab.
Getting Started
To get started, follow the directions in the “Setup” tab to download data to your computer and follow any installation instructions.
| Date | Lecture Topic | ||
|---|---|---|---|
| 1.22.2017 | LONI log-in | UNIX and Git 1 | 1.26.2017 | HW 1 Due |
| 1.29.2017 | UNIX and Git 2 | ||
| 2.2.2017 | HW 2 Due | ||
| 2.05.2017 | Sequence Alignment | MSA Homework | |
| 2.12.2017 | PAUP and Parsimony | ||
| 2.16.2017 | PAUP HW | ||
| 2.19.2017 | Models of sequence evolution | 2.23.2017 | Models HW |
| 2.26.2017 | Searching for ML Trees | 3.2.2017 | Tree Search HW |
| 3.5.2017 | Bayesian Estimation 1 | 3.9.2017 | HW 6 Due | 4.6.2017 | HW 7 Due |
| 4.9.2017 | RevBayes 2 | ||
| 3.23.2017 | HW 8 Due | ||
| 3.26.2017 | DivTime 1 | ||
| 3.30.2017 | HW 9 Due | ||
| 4.9.2017 | DivTime 2 | 4.30.2017 | Partitioning & Bayes Factor |
| 5.9.2017 | Partitioning & Bayes Factor HW Due |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.